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School of Marine and Atmospheric Sciences
Stony Brook University
Stony Brook, NY 11794-5000
USA

Site designed and maintained by
Bassem Allam

Bassem.Allam@stonybrook.edu

Publications
(Pr Paul Bowser's publications are available at his Cornell webpage)

Fact sheets:

Lobster calcinosis fact sheet

QPX in clams fact sheet

 

Scientific articles:

Dahl, S.F., Perrigault M., Allam, B.  (2008). Laboratory transmission studies of QPX disease in the hard clam: Pathogenicity of different pathogen isolates toward various clam stocks. Aquaculture. In Press.

Pales Espinosa, E., Allam, B., Ford S.E. (2008). Particle selection in the ribbed mussel Geukensia demissa and the Eastern oyster Crassostrea virginica: effect of microalgae growth stage. Estuarine, Coastal and Shelf Science. In Press.

Fast MD, Afonso L, Hosoya S, Johnson SC. In Press. Cortisol response and immune-related effects of Atlantic salmon (Salmo salar Linnaeus) subjected to short- and long-term stress.  Fish Shellfish Immunol Fish Shellfish Immunol.

Gobler C.J., Berry D.L., Anderson O.R., Burson A., Koch F., Rodgers B.S., Moore L.K., Goleski J.A., Allam B., Bowser P., Tang Y., Nuzzi R. Characterization, dynamics, and ecological impacts of harmful Cochlodinium polykrikoides blooms on eastern Long Island, NY, USA. Harmful Algae 7: 293-307.

2007. Lyons M.M., Lau Y.-T., Carden W.E., Ward J.E., Roberts S.B., Smolowitz R., Vallino J., Allam B. Characteristics of marine aggregates in shallow ecosystems: Implications for disease ecology. Ecohealth 4: 406-420. pdf

2007. Wang Z, Liu X, Dacanay A, Harrison BA, Fast M, Colquhoun DJ, Lund V, Brown LL, Li J, Altman E. Carbohydrate analysis and serological classification of typical and atypical isolates of Aeromonas salmonicida:  a rationale for the lipopolysaccharide-based classification of A. salmonicida.  Fish Shellfish Immunol. 23:1095-1106.

2007. Qian H., Liu Q., Allam B., Collier J.L. Molecular genetic variation within and among isolates of QPX (Thraustochytridae), a parasite of the hard clam (Mercenaria mercenaria). Diseases of Aquatic Organisms 77: 159-168.

2007. Pales Espinosa E., Barillé L., Allam B. Use of encapsulated live microalgae to investigate pre-ingestive selection in Crassostrea gigas. Journal of Experimental Marine Biology and Ecology 343:118-126. pdf

2007. Jones SRM, Fast MD, Johnson SC. Differential susceptibility and the responses of pink (Oncorhynchus gorbuscha) and chum (O. keta) salmon juveniles to infection with Lepeophtheirus salmonis. Dis Aquat Org. 75: 229-238.

2007. Fast MD, Johnson SC, Jones S. Differential expression of the proinflammatory cytokines IL-1β-1, TNFα-1 and IL-8 in vaccinated pink (Ocorhynchus gorbuscha) and chum (Oncorhynchus keta) salmon juveniles. Fish Shellfish Immunol. 22: 403-407.

2007. Fast MD, Johnson SC, Eddy TD, Pinto D, Ross NW. Lepeophtheirus salmonis secretory/excretory products and their effects on salmonid immune gene regulation. Parasite Immunol. 29: 179-189.

2007. Dahl, S.F., Allam, B. Laboratory transmission studies of QPX disease in the hard clam: Development of an infection procedure. Journal of Shellfish Research 26: 383-389.pdf

2007. Buggé D, Hégaret H, Wikfors G, Allam B. Oxidative burst in hard clam (Mercenaria mercenaria) haemocytes. Fish and Shellfish Immunology 23(1): 188-196. pdf

2007. Buggé D, Allam B. Effects of starvation and macroalgae extracts on the survival and growth of Quahog Parasite Unknown (QPX). Journal of Experimental Marine Biology and Ecology 348: 60-69. pdf

2006. Pales Espinosa E., Allam B. Comparative growth and survival of juvenile hard clams, Mercenaria mercenaria, fed commercially available diets. Zoo Biology 25: 513-525. pdf

2006. Moss B., Allam B. Fluorometric measurement of oxidative burst in lobster hemocytes and inhibiting effect of pathogenic bacteria and hypoxia. Journal of Shellfish Research 25(3): 1051-1057. pdf

2006. Fast MD, Ross NW, Muise, DM, Johnson SC. Differential gene expression in Atlantic salmon, Salmo salar, infected with Lepeophtheirus salmonis (Copepoda: Caligidae). J Aquat An Health 18:116-127.

2006. Fast MD, Muise, DM, Easy RE, Ross NW, Johnson SC. The effects of successive Lepeophtheirus salmonis infections on the immunological status of Atlantic salmon (Salmo salar). Fish Shellfish Immunol 21: 228-241.

2006. Fast MD, Cembella AD, Ross NW. In vitro transformation of paralytic shellfish toxins in the clams Mya arenaria and Protothaca staminea. Harmful Algae 5: 79-90.

2006. Fast MD, Afonso LOB, Johnson SC. PG-3: Methods for studying the effects of sea lice infection on host physiology and health. In “A reference manual for research involving wild/cultured fish interactions with sea lice” Farrell  AP (Ed.), BC Pacific Salmon Forum commissioned reports, 2006, 73-87. (http://www.pacificsalmonforum.ca//reports/index.php?op=commissioned_reports)

2006. Boettcher K., Smolowitz R., Lewis E., Allam B., Dickerson H., Ford S., Huq A., Reece K., Rivara G., Maloy A., Woodley C. Juvenile Oyster Disease (JOD) in Crassostrea virginica: synthesis of knowledge and recommendations. Journal of Shellfish Research 25(2): 683-686. pdf

2006. Allam B., Paillard C., Auffret M., Ford S.E. Effects of the pathogenic Vibrio tapetis on different bivalve species: II. hemocyte and humoral changes following in vivo challenge. Fish and Shellfish Immunology 20: 384-397. pdf

2006. Allam B., Ford S.E. Effects of the pathogenic Vibrio tapetis on different bivalve species: I. hemocyte changes following in vitro challenge. Fish and Shellfish Immunology 20: 374-383. pdf

2005. Fast MD, Ross NW, Johnson SC. Prostaglandin E2 modulation of gene expression in an Atlantic salmon (Salmo salar) macrophage-like cell line (SHK-1). Dev Comp Immunol 29:  951-963.

2005. Dove A.D.M., Allam B., Powers J.J., Sokolowski M.S. A prolonged thermal stress experiment on the American lobster, Homarus americanus. Journal of Shellfish Research 24: 761-765. pdf

2005. Buggé D.M., Allam B. A fluorometric technique for the in vitro measurement of growth and viability in Quahog Parasite Unknown. Journal of Shellfish Research 24: 1013-1018. pdf

2004. Paillard C., Allam B., Oubella R. Effect of temperature on defense parameters in Manila clam, Ruditapes philippinarum, challenged with Vibrio tapetis. Diseases of Aquatic Organisms 59: 249-262. pdf

2004. Johnson, SC and Fast MD. Interactions between sea lice and their hosts. In “Host-parasite interactions”. Wiegertjes GF and Flik G (eds), BIOS Scientific Publishers Ltd. 2004, 131-161.

2004. Fast MD, Ross NW, Craft CA, Locke SJ, MacKinnon SL, Johnson SC. Lepeophtheirus salmonis:  Characterization of prostaglandin E2 in secretory products of the salmon louse by RP-HPLC and Mass Spectrometry. Exp Parasitol 107: 5-13.

2003. Fast MD, Burka JF, Johnson SC, Ross NW. Enzymes released from Lepeophtheirus salmonis in response to mucus from different salmonids. J Parasitol  89: 7-13.

2002. Fast MD, Sims DE, Burka JF, Mustafa A, Ross NW.  Skin morphology and humoral non-specific defence parameters of mucus and plasma in rainbow trout coho and Atlantic salmon. Comp Biochem Phys A 132: 645-657.

2002. Fast MD, Ross NW, Mustafa A, Sims DE, Johnson SC, Conboy GA, Speare DJ, Johnson G, Burka JF. Susceptibility of rainbow trout Oncorhynchus mykiss, Atlantic salmon Salmo salar and coho salmon Oncorhynchus kisutch to experimental infection with sea lice Lepeophtheirus salmonis.  Dis Aquat Org 52: 57-68.

2002. Allam B., Paillard C., Ford S.E. Pathogenicity of Vibrio tapetis, the etiologic agent of brown ring disease in clams. Diseases of Aquatic organisms 48: 221-231. pdf

2002. Allam B., Ashton-Alcox K.A., Ford S.E. Flow cytometric measurement of hemocyte viability and phagocytic activity in the clam Ruditapes philippinarum. Journal of Shellfish Research 21: 13-19. pdf

2002. Allam B., Ashton-Alcox K.A., Ford S.E. Flow cytometric characterization and separation of hemocyte in three bivalve species. Fish & Shellfish Immunology 13: 141-158. pdf

2001. Allam B., Ashton-Alcox K.A., Ford S.E. Haemocyte parameters associated with resistance against brown ring disease in clams. Developmental & Comparative Immunology 25: 365-375. pdf

2000. Ashton-Alcox K.A., Allam B., Ford S.E. Applications of flow cytometry to bivalve pathology. In : Recent Advances in Marine Biotechnology. Vol. 5: Immunology and Pathology. (M. Fingerman & R. Nagabhushanam, eds.) pp. 85-124. Enfield, NH, USA: Science Publishers, Inc.

2000. Allam B., Paillard C., Howard A., Le Pennec M. Isolation of the pathogen Vibrio tapetis and defense parameters in Manila clam, Ruditapes philippinarum, cultured in England. Diseases of Aquatic Organisms 41: 105-113. pdf

2000. Allam B., Paillard C., Auffret M. Alterations in hemolymph and extrapallial fluid parameters in the Manila clam, Ruditapes philippinarum challenged with the pathogen, Vibrio tapetis. Journal of Invertebrate Pathology 76: 63-69. pdf

2000. Allam B. Auffret M. The presence of an inducible antibacterial activity in the hemolymph of the Manila clam, Ruditapes philippinarum. Lebanese Science Bulletin 1(1): 1-9.

1998. Allam B., Paillard C. Defense factors in clam extrapallial fluids. Diseases of Aquatic Organisms 33: 123-128. pdf

1996. Oubella R., Maes P., Allam B., Paillard C., Auffret M. Selective induction of hemocytic response in Ruditapes philippinarum (Bivalvia) by different species of Vibrio (Bacteria). Aquatic Living Ressources 9: 137-143.

1996. Allam B., Paillard C., Maes P. Localization of the pathogen Vibrio P1 in clams affected by Brown Ring Disease. Diseases of Aquatic Organisms 27: 149-155. pdf

1996. Allam B., Paillard C., Maes P. Effet du nouveau fluorochrome redox, le chlorure de cyanoditolyl tétrazolium (CTC), sur une souche bactérienne du genre  Vibrio. Lebanese Science Bulletin 9(1): 1-10.

 

 
Last update: April 2008